Magain et al. (2017) used the genomes of lichen mycobionts from the Lecanoromycetes and Eurotiomycetes to develop primers for regions of synteny across broad phylogenetic groups.
Reference
Magain, N., Miadlikowska, J., Mueller, O., Gajdeczka, M., Truong, C., Salamov, A., Dubchak, I., Grigoriev, I. V., Goffinet, B., Sérusiaux, E., and Lutzoni, F. 2017. Conserved genomic collinearity as a source of broadly applicable, fast evolving, markers to resolve species complexes: A case study using the lichen-forming genus Peltigera section Polydactylon. Molecular Phylogenetics and Evolution 117:10–29.